SNP Detail For rs17157913
1.Mapping Information
Human SNP ID rs17157913
Human chromosome chr7
Human SNP position 110700918
Pig chromosome chr18
Pig SNP position 37842583
2.Annotation Information
PubMed ID24324551
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24324551
StudyGenome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
Disease/TraitPR interval in Tripanosoma cruzi seropositivity
Initial sample580 Brazilian ancestry individuals
Replication sampleNA
Region7q31.1
Chromosome idchr7
Chromosome position110700918
Reported geneNR
Mapped geneIMMP2L
Upstream gene id
Downstream gene id
SNP gene ids83943
Upstream gene distance
Downstream gene distance
SNP risk allelers17157913-?
SNPsrs17157913
Merged0
SNP id current17157913
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta
%95 Ci
PlatformAffymetrix [5486770] (imputed)
CNVN
Mapped traitPR interval, Trypanosoma cruzi seropositivity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004462, http://www.ebi.ac.uk/efo/EFO_0005530
Study accessionGCST002279