Human SNP ID | rs17150703 |
---|---|
Human chromosome | chr8 |
Human SNP position | 9888288 |
Pig chromosome | chr14 |
Pig SNP position | 14429148 |
PubMed ID | 20421936 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20421936 |
Study | Two new Loci for body-weight regulation identified in a joint analysis of genome-wide association studies for early-onset extreme obesity in French and german study groups. |
Disease/Trait | Obesity (early onset extreme) |
Initial sample | 1,138 European ancestry cases, 1,120 European ancestry normal or lean controls |
Replication sample | 1,181 European ancestry cases, 1,960 European ancestry normal or lean controls, 981 European ancestry cases and 1,430 European ancestry controls from 715 families |
Region | 8p23.1 |
Chromosome id | chr8 |
Chromosome position | 9888288 |
Reported gene | MSRA, TNKS |
Mapped gene | TNKS - LINC00599 |
Upstream gene id | 8658 |
Downstream gene id | 157627 |
SNP gene ids | |
Upstream gene distance | 105942 |
Downstream gene distance | 11776 |
SNP risk allele | rs17150703-A |
SNPs | rs17150703 |
Merged | 0 |
SNP id current | 17150703 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | 1.18 |
%95 Ci | [1.03-1.35] |
Platform | Affymetrix, Illumina [1596878] (imputed) |
CNV | N |
Mapped trait | obesity |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001073 |
Study accession | GCST000663 |