SNP Detail For rs17150703
1.Mapping Information
Human SNP ID rs17150703
Human chromosome chr8
Human SNP position 9888288
Pig chromosome chr14
Pig SNP position 14429148
2.Annotation Information
PubMed ID20421936
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20421936
StudyTwo new Loci for body-weight regulation identified in a joint analysis of genome-wide association studies for early-onset extreme obesity in French and german study groups.
Disease/TraitObesity (early onset extreme)
Initial sample1,138 European ancestry cases, 1,120 European ancestry normal or lean controls
Replication sample1,181 European ancestry cases, 1,960 European ancestry normal or lean controls, 981 European ancestry cases and 1,430 European ancestry controls from 715 families
Region8p23.1
Chromosome idchr8
Chromosome position9888288
Reported geneMSRA, TNKS
Mapped geneTNKS - LINC00599
Upstream gene id8658
Downstream gene id157627
SNP gene ids
Upstream gene distance105942
Downstream gene distance11776
SNP risk allelers17150703-A
SNPsrs17150703
Merged0
SNP id current17150703
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta1.18
%95 Ci[1.03-1.35]
PlatformAffymetrix, Illumina [1596878] (imputed)
CNVN
Mapped traitobesity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001073
Study accessionGCST000663