Human SNP ID | rs1714746 |
---|---|
Human chromosome | chr8 |
Human SNP position | 4247625 |
Pig chromosome | chr15 |
Pig SNP position | 40559053 |
PubMed ID | 23648065 |
---|---|
Journal | Cancer Sci |
Link | www.ncbi.nlm.nih.gov/pubmed/23648065 |
Study | Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. |
Disease/Trait | Adverse response to chemotherapy (neutropenia/leucopenia) (carboplatin) |
Initial sample | 261 Japanese ancestry cases, 262 Japanese ancestry controls |
Replication sample | NA |
Region | 8p23.2 |
Chromosome id | chr8 |
Chromosome position | 4247625 |
Reported gene | CSMD1 |
Mapped gene | CSMD1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 64478 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1714746-G |
SNPs | rs1714746 |
Merged | 0 |
SNP id current | 1714746 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.435 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | (Recessive model) |
Or beta | 1.61 |
%95 Ci | [1.261-2.056] |
Platform | Illumina [733202] |
CNV | N |
Mapped trait | response to carboplatin, response to antineoplastic agent |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097328, http://purl.obolibrary.org/obo/GO_0097327 |
Study accession | GCST002004 |