Human SNP ID | rs17145638 |
---|---|
Human chromosome | chrX |
Human SNP position | 40026377 |
Pig chromosome | chrX |
Pig SNP position | 39806582 |
PubMed ID | 23470693 |
---|---|
Journal | J Dent Res |
Link | www.ncbi.nlm.nih.gov/pubmed/23470693 |
Study | Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition. |
Disease/Trait | Pit-and-Fissure caries |
Initial sample | 996 European ancestry individuals |
Replication sample | |
Region | Xp11.4 |
Chromosome id | chrX |
Chromosome position | 40026377 |
Reported gene | BCOR |
Mapped gene | LOC105373180 - BCOR |
Upstream gene id | 105373180 |
Downstream gene id | 54880 |
SNP gene ids | |
Upstream gene distance | 87161 |
Downstream gene distance | 24869 |
SNP risk allele | rs17145638-C |
SNPs | rs17145638 |
Merged | 0 |
SNP id current | 17145638 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.1169 |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | |
Or beta | 2.329 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [1200000] (imputed) |
CNV | N |
Mapped trait | pit and fissure surface dental caries |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006338 |
Study accession | GCST001897 |