SNP Detail For rs17145638
1.Mapping Information
Human SNP ID rs17145638
Human chromosome chrX
Human SNP position 40026377
Pig chromosome chrX
Pig SNP position 39806582
2.Annotation Information
PubMed ID23470693
JournalJ Dent Res
Linkwww.ncbi.nlm.nih.gov/pubmed/23470693
StudyGenome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.
Disease/TraitPit-and-Fissure caries
Initial sample996 European ancestry individuals
Replication sample
RegionXp11.4
Chromosome idchrX
Chromosome position40026377
Reported geneBCOR
Mapped geneLOC105373180 - BCOR
Upstream gene id105373180
Downstream gene id54880
SNP gene ids
Upstream gene distance87161
Downstream gene distance24869
SNP risk allelers17145638-C
SNPsrs17145638
Merged0
SNP id current17145638
Contextintergenic_variant
Intergenic1
Allele frequency0.1169
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta2.329
%95 Ci[NR] unit decrease
PlatformIllumina [1200000] (imputed)
CNVN
Mapped traitpit and fissure surface dental caries
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006338
Study accessionGCST001897