SNP Detail For rs17140547
1.Mapping Information
Human SNP ID rs17140547
Human chromosome chr11
Human SNP position 80666008
Pig chromosome chr9
Pig SNP position 16697790
2.Annotation Information
PubMed ID22903471
JournalBrain Imaging Behav
Linkwww.ncbi.nlm.nih.gov/pubmed/22903471
StudyGenome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.
Disease/TraitLentiform nucleus volume
Initial sample162 European ancestry Alzheimer__s disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families
Replication sampleNA
Region11q14.1
Chromosome idchr11
Chromosome position80666008
Reported geneintergenic
Mapped geneLOC101928964
Upstream gene id
Downstream gene id
SNP gene ids101928964
Upstream gene distance
Downstream gene distance
SNP risk allelers17140547-T
SNPsrs17140547
Merged0
SNP id current17140547
Contextintergenic_variant
Intergenic0
Allele frequency0.02
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta532.56
%95 Ci[NR] unit decrease
PlatformIllumina [2380200] (imputed)
CNVN
Mapped traitlentiform nucleus measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004913
Study accessionGCST001640