SNP Detail For rs17132883
1.Mapping Information
Human SNP ID rs17132883
Human chromosome chr5
Human SNP position 111166731
Pig chromosome chr2
Pig SNP position 120470166
2.Annotation Information
PubMed ID24024966
JournalJ Clin Periodontol
Linkwww.ncbi.nlm.nih.gov/pubmed/24024966
StudyGenome-wide association study of chronic periodontitis in a general German population.
Disease/TraitPeriodontitis (PAL4Q3)
Initial sampleup to 2,969 European ancestry individuals
Replication sampleNA
Region5q22.1
Chromosome idchr5
Chromosome position111166731
Reported geneWDR36
Mapped geneWDR36 - RPS3AP21
Upstream gene id134430
Downstream gene id402287
SNP gene ids
Upstream gene distance36229
Downstream gene distance25454
SNP risk allelers17132883-T
SNPsrs17132883
Merged0
SNP id current17132883
Contextintergenic_variant
Intergenic1
Allele frequency0.04
P value0.000002
Pvalue mlog5.69897000433601
P value text(Age 20-60 years)
Or beta2.19
%95 Ci[1.59-3.01]
PlatformAffymetrix, Illumina [up to 17585496] (imputed)
CNVN
Mapped traitperiodontitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000649
Study accessionGCST002136