SNP Detail For rs17127169
1.Mapping Information
Human SNP ID rs17127169
Human chromosome chr1
Human SNP position 64946454
Pig chromosome chr6
Pig SNP position 135853901
2.Annotation Information
PubMed ID25865494
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25865494
StudyGenome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.
Disease/TraitSitting height ratio
Initial sample3,545 African Americans individuals, 12,965 European ancestry women, 8,625 European ancestry men
Replication sampleNA
Region1p31.3
Chromosome idchr1
Chromosome position64946454
Reported geneNR
Mapped geneJAK1
Upstream gene id
Downstream gene id
SNP gene ids3716
Upstream gene distance
Downstream gene distance
SNP risk allelers17127169-G
SNPsrs17127169
Merged0
SNP id current17127169
Contextintron_variant
Intergenic0
Allele frequency0.085
P value0.000005
Pvalue mlog5.30102999566398
P value text(EA)
Or beta0.08
%95 Ci[0.047-0.113] unit decrease
PlatformAffymetrix, Illumina [up to 10250422] (imputed)
CNVN
Mapped traitsitting height ratio
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007118
Study accessionGCST002843