SNP Detail For rs1712517
1.Mapping Information
Human SNP ID rs1712517
Human chromosome chr10
Human SNP position 103273258
Pig chromosome chr14
Pig SNP position 124165670
2.Annotation Information
PubMed ID22683712
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22683712
StudyGenome-wide association analysis identifies susceptibility loci for migraine without aura.
Disease/TraitMigraine
Initial sample2,326 European ancestry cases, 4,580 European ancestry controls
Replication sample2,508 European ancestry cases, 2,652 European ancestry controls
Region10q24.33
Chromosome idchr10
Chromosome position103273258
Reported geneINA
Mapped geneRPEL1 - INA
Upstream gene id729020
Downstream gene id9118
SNP gene ids
Upstream gene distance25242
Downstream gene distance3905
SNP risk allelers1712517-T
SNPsrs1712517
Merged0
SNP id current1712517
Contextupstream_gene_variant
Intergenic1
Allele frequency0.48
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta1.13
%95 Ci[1.07-1.17]
PlatformIllumina [1246388] (imputed)
CNVN
Mapped traitmigraine disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003821
Study accessionGCST001563