SNP Detail For rs17124318
1.Mapping Information
Human SNP ID rs17124318
Human chromosome chr1
Human SNP position 63015059
Pig chromosome chr6
Pig SNP position 137646867
2.Annotation Information
PubMed ID20966902
JournalObesity (Silver Spring)
Linkwww.ncbi.nlm.nih.gov/pubmed/20966902
StudyGenome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.
Disease/TraitBody mass index
Initial sample1,780 Filipino ancestry females
Replication sampleNA
Region1p31.3
Chromosome idchr1
Chromosome position63015059
Reported geneATG4C
Mapped geneLOC105378769
Upstream gene id
Downstream gene id
SNP gene ids105378769
Upstream gene distance
Downstream gene distance
SNP risk allelers17124318-C
SNPsrs17124318
Merged0
SNP id current17124318
Contextupstream_gene_variant
Intergenic0
Allele frequency0.87
P value0.0000006
Pvalue mlog6.22184874961635
P value text
Or beta0.07
%95 Ci[0.04-0.10] unit increase
PlatformAffymetrix [2073674] (imputed)
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST000840
PubMed ID20966902
JournalObesity (Silver Spring)
Linkwww.ncbi.nlm.nih.gov/pubmed/20966902
StudyGenome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.
Disease/TraitWeight
Initial sample1,780 Filipino ancestry females
Replication sampleNA
Region1p31.3
Chromosome idchr1
Chromosome position63015059
Reported geneATG4C
Mapped geneLOC105378769
Upstream gene id
Downstream gene id
SNP gene ids105378769
Upstream gene distance
Downstream gene distance
SNP risk allelers17124318-C
SNPsrs17124318
Merged0
SNP id current17124318
Contextupstream_gene_variant
Intergenic0
Allele frequency0.87
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta3.98
%95 Ci[2.30-5.66] kg increase
PlatformAffymetrix [2073674] (imputed)
CNVN
Mapped traitbody weight
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004338
Study accessionGCST000837