Human SNP ID | rs17124318 |
---|---|
Human chromosome | chr1 |
Human SNP position | 63015059 |
Pig chromosome | chr6 |
Pig SNP position | 137646867 |
PubMed ID | 20966902 |
---|---|
Journal | Obesity (Silver Spring) |
Link | www.ncbi.nlm.nih.gov/pubmed/20966902 |
Study | Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women. |
Disease/Trait | Body mass index |
Initial sample | 1,780 Filipino ancestry females |
Replication sample | NA |
Region | 1p31.3 |
Chromosome id | chr1 |
Chromosome position | 63015059 |
Reported gene | ATG4C |
Mapped gene | LOC105378769 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105378769 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17124318-C |
SNPs | rs17124318 |
Merged | 0 |
SNP id current | 17124318 |
Context | upstream_gene_variant |
Intergenic | 0 |
Allele frequency | 0.87 |
P value | 0.0000006 |
Pvalue mlog | 6.22184874961635 |
P value text | |
Or beta | 0.07 |
%95 Ci | [0.04-0.10] unit increase |
Platform | Affymetrix [2073674] (imputed) |
CNV | N |
Mapped trait | body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST000840 |
PubMed ID | 20966902 |
Journal | Obesity (Silver Spring) |
Link | www.ncbi.nlm.nih.gov/pubmed/20966902 |
Study | Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women. |
Disease/Trait | Weight |
Initial sample | 1,780 Filipino ancestry females |
Replication sample | NA |
Region | 1p31.3 |
Chromosome id | chr1 |
Chromosome position | 63015059 |
Reported gene | ATG4C |
Mapped gene | LOC105378769 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105378769 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17124318-C |
SNPs | rs17124318 |
Merged | 0 |
SNP id current | 17124318 |
Context | upstream_gene_variant |
Intergenic | 0 |
Allele frequency | 0.87 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 3.98 |
%95 Ci | [2.30-5.66] kg increase |
Platform | Affymetrix [2073674] (imputed) |
CNV | N |
Mapped trait | body weight |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004338 |
Study accession | GCST000837 |