SNP Detail For rs17122693
1.Mapping Information
Human SNP ID rs17122693
Human chromosome chr14
Human SNP position 50617517
Pig chromosome chr1
Pig SNP position 200685426
2.Annotation Information
PubMed ID20125193
JournalEur J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20125193
StudyCommon genetic variation and performance on standardized cognitive tests.
Disease/TraitCognitive performance
Initial sampleUp to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals
Replication sampleNA
Region14q22.1
Chromosome idchr14
Chromosome position50617517
Reported geneATL1, SPG3A
Mapped geneATL1
Upstream gene id
Downstream gene id
SNP gene ids51062
Upstream gene distance
Downstream gene distance
SNP risk allelers17122693-?
SNPsrs17122693
Merged0
SNP id current17122693
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000003
Pvalue mlog6.52287874528033
P value text(TrailsA)
Or beta
%95 Ci
PlatformIllumina [up to 563855]
CNVN
Mapped traitneuropsychological test
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003926
Study accessionGCST000579