Human SNP ID | rs17114046 |
---|---|
Human chromosome | chr1 |
Human SNP position | 56500678 |
Pig chromosome | chr6 |
Pig SNP position | 143728005 |
PubMed ID | 21846871 |
---|---|
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21846871 |
Study | A genome-wide association study in europeans and South asians identifies 5 new Loci for coronary artery disease. |
Disease/Trait | Coronary heart disease |
Initial sample | 8,424 European ancestry cases, 6,996 South Asian ancestry cases, 15,062 controls |
Replication sample | 21,408 cases, 19,185 controls |
Region | 1p32.2 |
Chromosome id | chr1 |
Chromosome position | 56500678 |
Reported gene | PPAP2B |
Mapped gene | PPAP2B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 8613 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17114046-? |
SNPs | rs17114046 |
Merged | 0 |
SNP id current | 17114046 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [~ 57500] |
CNV | N |
Mapped trait | coronary heart disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001645 |
Study accession | GCST001185 |
PubMed ID | 21378988 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21378988 |
Study | A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease. |
Disease/Trait | Coronary heart disease |
Initial sample | 8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls |
Replication sample | 18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls |
Region | 1p32.2 |
Chromosome id | chr1 |
Chromosome position | 56500678 |
Reported gene | PPAP2B |
Mapped gene | PPAP2B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 8613 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17114046-? |
SNPs | rs17114046 |
Merged | 0 |
SNP id current | 17114046 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [574919] |
CNV | N |
Mapped trait | coronary heart disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001645 |
Study accession | GCST000999 |