SNP Detail For rs17114046
1.Mapping Information
Human SNP ID rs17114046
Human chromosome chr1
Human SNP position 56500678
Pig chromosome chr6
Pig SNP position 143728005
2.Annotation Information
PubMed ID21846871
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21846871
StudyA genome-wide association study in europeans and South asians identifies 5 new Loci for coronary artery disease.
Disease/TraitCoronary heart disease
Initial sample8,424 European ancestry cases, 6,996 South Asian ancestry cases, 15,062 controls
Replication sample21,408 cases, 19,185 controls
Region1p32.2
Chromosome idchr1
Chromosome position56500678
Reported genePPAP2B
Mapped genePPAP2B
Upstream gene id
Downstream gene id
SNP gene ids8613
Upstream gene distance
Downstream gene distance
SNP risk allelers17114046-?
SNPsrs17114046
Merged0
SNP id current17114046
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000003
Pvalue mlog6.52287874528033
P value text
Or beta
%95 Ci
PlatformIllumina [~ 57500]
CNVN
Mapped traitcoronary heart disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001645
Study accessionGCST001185
PubMed ID21378988
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21378988
StudyA genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.
Disease/TraitCoronary heart disease
Initial sample8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls
Replication sample18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls
Region1p32.2
Chromosome idchr1
Chromosome position56500678
Reported genePPAP2B
Mapped genePPAP2B
Upstream gene id
Downstream gene id
SNP gene ids8613
Upstream gene distance
Downstream gene distance
SNP risk allelers17114046-?
SNPsrs17114046
Merged0
SNP id current17114046
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta
%95 Ci
PlatformIllumina [574919]
CNVN
Mapped traitcoronary heart disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001645
Study accessionGCST000999