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SNP Detail For rs17111652
1.Mapping Information
| Human SNP ID | rs17111652 |
|---|---|
| Human chromosome | chr1 |
| Human SNP position | 55124792 |
| Pig chromosome | chr6 |
| Pig SNP position | 145378724 |
2.Annotation Information
| PubMed ID | 25514360 |
|---|---|
| Journal | Am J Respir Cell Mol Biol |
| Link | www.ncbi.nlm.nih.gov/pubmed/25514360 |
| Study | Genome Wide Association Study Identifies Novel Loci Associated with Airway Responsiveness in COPD. |
| Disease/Trait | Airway responsiveness in chronic obstructive pulmonary disease |
| Initial sample | Up to 4,108 European American cases |
| Replication sample | NA |
| Region | 1p32.3 |
| Chromosome id | chr1 |
| Chromosome position | 55124792 |
| Reported gene | USP24 |
| Mapped gene | USP24 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 23358 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs17111652 -T |
| SNPs | rs17111652 |
| Merged | 0 |
| SNP id current | 17111652 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.047 |
| P value | 0.0000005 |
| Pvalue mlog | 6.30102999566398 |
| P value text | (Categorical PC20) |
| Or beta | 0.234 |
| %95 Ci | [NR] unit decrease |
| Platform | Illumina [546355] |
| CNV | N |
| Mapped trait | airway responsiveness measurement, chronic obstructive pulmonary disease |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006897, http://www.ebi.ac.uk/efo/EFO_0000341 |
| Study accession | GCST002724 |
| PubMed ID | 25514360 |
| Journal | Am J Respir Cell Mol Biol |
| Link | www.ncbi.nlm.nih.gov/pubmed/25514360 |
| Study | Genome Wide Association Study Identifies Novel Loci Associated with Airway Responsiveness in COPD. |
| Disease/Trait | Airway responsiveness in chronic obstructive pulmonary disease |
| Initial sample | Up to 4,108 European American cases |
| Replication sample | NA |
| Region | 1p32.3 |
| Chromosome id | chr1 |
| Chromosome position | 55124792 |
| Reported gene | USP24 |
| Mapped gene | USP24 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 23358 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs17111652-T |
| SNPs | rs17111652 |
| Merged | 0 |
| SNP id current | 17111652 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.0475 |
| P value | 0.00000009 |
| Pvalue mlog | 7.04575749056067 |
| P value text | (O鈥機onnor Slope) |
| Or beta | 0.071 |
| %95 Ci | [NR] unit decrease |
| Platform | Illumina [546355] |
| CNV | N |
| Mapped trait | airway responsiveness measurement, chronic obstructive pulmonary disease |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006897, http://www.ebi.ac.uk/efo/EFO_0000341 |
| Study accession | GCST002724 |
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and Xi'an University of Technology ©2014-2017 All Rights Reserved.
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