SNP Detail For rs17110679
1.Mapping Information
Human SNP ID rs17110679
Human chromosome chr11
Human SNP position 110061343
Pig chromosome chr9
Pig SNP position 42777196
2.Annotation Information
PubMed ID24324551
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24324551
StudyGenome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
Disease/TraitAntibody status in Tripanosoma cruzi seropositivity
Initial sample580 Brazilian ancestry individuals
Replication sampleNA
Region11q22.3
Chromosome idchr11
Chromosome position110061343
Reported geneNR
Mapped geneLOC105369484 - LOC105369485
Upstream gene id105369484
Downstream gene id105369485
SNP gene ids
Upstream gene distance88348
Downstream gene distance24717
SNP risk allelers17110679-?
SNPsrs17110679
Merged0
SNP id current17110679
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta
%95 Ci
PlatformAffymetrix [5486770] (imputed)
CNVN
Mapped traitantibody measurement, Trypanosoma cruzi seropositivity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004556, http://www.ebi.ac.uk/efo/EFO_0005530
Study accessionGCST002280