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SNP Detail For rs17101923
1.Mapping Information
| Human SNP ID | rs17101923 |
|---|---|
| Human chromosome | chr12 |
| Human SNP position | 65944422 |
| Pig chromosome | chr5 |
| Pig SNP position | 33494420 |
2.Annotation Information
| PubMed ID | 23704328 |
|---|---|
| Journal | Hum Mol Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23704328 |
| Study | Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances. |
| Disease/Trait | Primary tooth development (time to first tooth eruption) |
| Initial sample | 11,118 European ancestry individuals |
| Replication sample | |
| Region | 12q14.3 |
| Chromosome id | chr12 |
| Chromosome position | 65944422 |
| Reported gene | HMGA2 |
| Mapped gene | HMGA2 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 8091 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs17101923-G |
| SNPs | rs17101923 |
| Merged | 0 |
| SNP id current | 17101923 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | NR |
| P value | 0.00000000006 |
| Pvalue mlog | 10.2218487496163 |
| P value text | |
| Or beta | 0.212 |
| %95 Ci | [0.15-0.28] unit decrease |
| Platform | Illumina [2446724] (imputed) |
| CNV | N |
| Mapped trait | tooth eruption |
| Mapped trait URI | http://purl.obolibrary.org/obo/GO_0044691 |
| Study accession | GCST002030 |
| PubMed ID | 23704328 |
| Journal | Hum Mol Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23704328 |
| Study | Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances. |
| Disease/Trait | Primary tooth development (number of teeth) |
| Initial sample | 11,513 European ancestry individuals |
| Replication sample | |
| Region | 12q14.3 |
| Chromosome id | chr12 |
| Chromosome position | 65944422 |
| Reported gene | HMGA2 |
| Mapped gene | HMGA2 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 8091 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs17101923-G |
| SNPs | rs17101923 |
| Merged | 0 |
| SNP id current | 17101923 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | NR |
| P value | 0.0000000001 |
| Pvalue mlog | 10 |
| P value text | |
| Or beta | 0.182 |
| %95 Ci | [0.13-0.24] unit increase |
| Platform | Illumina [2446724] (imputed) |
| CNV | N |
| Mapped trait | odontogenesis |
| Mapped trait URI | http://purl.obolibrary.org/obo/GO_0042476 |
| Study accession | GCST002031 |
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