SNP Detail For rs17100498
1.Mapping Information
Human SNP ID rs17100498
Human chromosome chr5
Human SNP position 143624040
Pig chromosome chr2
Pig SNP position 151363292
2.Annotation Information
PubMed ID20195266
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/20195266
StudyGenomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.
Disease/TraitResponse to antipsychotic treatment
Initial sample421 European ancestry, 214 African American, and 103 cases
Replication sampleNA
Region5q31.3
Chromosome idchr5
Chromosome position143624040
Reported geneintergenic
Mapped geneLOC105378209 - LOC105378210
Upstream gene id105378209
Downstream gene id105378210
SNP gene ids
Upstream gene distance25606
Downstream gene distance38853
SNP risk allelers17100498-?
SNPsrs17100498
Merged0
SNP id current17100498
Contextintron_variant
Intergenic1
Allele frequency0.126
P value0.0000005
Pvalue mlog6.30102999566398
P value text(risperidone-hemoglobin A1c)
Or beta
%95 Ci
PlatformAffymetrix [492900]
CNVN
Mapped traitresponse to risperidone
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097336
Study accessionGCST000618