SNP Detail For rs17099388
1.Mapping Information
Human SNP ID rs17099388
Human chromosome chr5
Human SNP position 142715685
Pig chromosome chr2
Pig SNP position 150444807
2.Annotation Information
PubMed ID25646338
JournalAm J Clin Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/25646338
StudyGenetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.
Disease/TraitTrans fatty acid levels
Initial sample8,013 European ancestry individuals
Replication sample1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals
Region5q31.3
Chromosome idchr5
Chromosome position142715685
Reported geneNR
Mapped geneFGF1 - LOC101926975
Upstream gene id2246
Downstream gene id101926975
SNP gene ids
Upstream gene distance17615
Downstream gene distance29915
SNP risk allelers17099388-A
SNPsrs17099388
Merged0
SNP id current17099388
Contextintergenic_variant
Intergenic1
Allele frequency0.0344
P value0.0000004
Pvalue mlog6.39794000867203
P value text(Trans/cis-18:2, EA)
Or beta0.0127
%95 Ci[0.0078-0.0176] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traittrans/cis-18:2 fatty acid measurement, trans fatty acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006825, http://www.ebi.ac.uk/efo/EFO_0006821
Study accessionGCST002721