Human SNP ID | rs17099388 |
---|---|
Human chromosome | chr5 |
Human SNP position | 142715685 |
Pig chromosome | chr2 |
Pig SNP position | 150444807 |
PubMed ID | 25646338 |
---|---|
Journal | Am J Clin Nutr |
Link | www.ncbi.nlm.nih.gov/pubmed/25646338 |
Study | Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium. |
Disease/Trait | Trans fatty acid levels |
Initial sample | 8,013 European ancestry individuals |
Replication sample | 1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals |
Region | 5q31.3 |
Chromosome id | chr5 |
Chromosome position | 142715685 |
Reported gene | NR |
Mapped gene | FGF1 - LOC101926975 |
Upstream gene id | 2246 |
Downstream gene id | 101926975 |
SNP gene ids | |
Upstream gene distance | 17615 |
Downstream gene distance | 29915 |
SNP risk allele | rs17099388-A |
SNPs | rs17099388 |
Merged | 0 |
SNP id current | 17099388 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.0344 |
P value | 0.0000004 |
Pvalue mlog | 6.39794000867203 |
P value text | (Trans/cis-18:2, EA) |
Or beta | 0.0127 |
%95 Ci | [0.0078-0.0176] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | trans/cis-18:2 fatty acid measurement, trans fatty acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006825, http://www.ebi.ac.uk/efo/EFO_0006821 |
Study accession | GCST002721 |