SNP Detail For rs17087282
1.Mapping Information
Human SNP ID rs17087282
Human chromosome chr6
Human SNP position 156266886
Pig chromosome chr1
Pig SNP position 12879260
2.Annotation Information
PubMed ID25866641
JournalBiomark Res
Linkwww.ncbi.nlm.nih.gov/pubmed/25866641
StudyA genome wide association study on Newfoundland colorectal cancer patients__ survival outcomes.
Disease/TraitSurvival in microsatellite instability low/stable colorectal cancer
Initial sample431 European ancestry cases
Replication sampleNA
Region6q25.3
Chromosome idchr6
Chromosome position156266886
Reported geneLOC101928923
Mapped geneLOC101928923
Upstream gene id
Downstream gene id
SNP gene ids101928923
Upstream gene distance
Downstream gene distance
SNP risk allelers17087282-?
SNPsrs17087282
Merged0
SNP id current17087282
Contextintergenic_variant
Intergenic0
Allele frequency
P value0.000002
Pvalue mlog5.69897000433601
P value text(overall survival)
Or beta2.47
%95 Ci[1.71-3.56]
PlatformIllumina [729737]
CNVN
Mapped traitcolorectal cancer, microsatellite instability measurement, overall survival
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842, http://www.ebi.ac.uk/efo/EFO_0007054, http://www.ebi.ac.uk/efo/EFO_0000638
Study accessionGCST002820