Human SNP ID | rs17087282 |
---|---|
Human chromosome | chr6 |
Human SNP position | 156266886 |
Pig chromosome | chr1 |
Pig SNP position | 12879260 |
PubMed ID | 25866641 |
---|---|
Journal | Biomark Res |
Link | www.ncbi.nlm.nih.gov/pubmed/25866641 |
Study | A genome wide association study on Newfoundland colorectal cancer patients__ survival outcomes. |
Disease/Trait | Survival in microsatellite instability low/stable colorectal cancer |
Initial sample | 431 European ancestry cases |
Replication sample | NA |
Region | 6q25.3 |
Chromosome id | chr6 |
Chromosome position | 156266886 |
Reported gene | LOC101928923 |
Mapped gene | LOC101928923 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928923 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17087282-? |
SNPs | rs17087282 |
Merged | 0 |
SNP id current | 17087282 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (overall survival) |
Or beta | 2.47 |
%95 Ci | [1.71-3.56] |
Platform | Illumina [729737] |
CNV | N |
Mapped trait | colorectal cancer, microsatellite instability measurement, overall survival |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842, http://www.ebi.ac.uk/efo/EFO_0007054, http://www.ebi.ac.uk/efo/EFO_0000638 |
Study accession | GCST002820 |