SNP Detail For rs17086188
1.Mapping Information
Human SNP ID rs17086188
Human chromosome chr5
Human SNP position 96510150
Pig chromosome chr2
Pig SNP position 106844997
2.Annotation Information
PubMed ID25231870
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25231870
StudyParent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.
Disease/TraitMenarche (age at onset)
Initial sampleUp to 182,413 European ancestry females
Replication sampleNA
Region5q15
Chromosome idchr5
Chromosome position96510150
Reported genePCSK1
Mapped geneLOC101929710
Upstream gene id
Downstream gene id
SNP gene ids101929710
Upstream gene distance
Downstream gene distance
SNP risk allelers17086188-A
SNPsrs17086188
Merged0
SNP id current17086188
Contextintron_variant
Intergenic0
Allele frequency0.94
P value0.00000004
Pvalue mlog7.39794000867203
P value text
Or beta0.07
%95 Ci[0.045-0.095] unit increase
PlatformAffymetrix, Illumina [2441815] (imputed)
CNVN
Mapped traitage at menarche
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004703
Study accessionGCST002541