Human SNP ID | rs17084405 |
---|---|
Human chromosome | chr18 |
Human SNP position | 71429162 |
Pig chromosome | chr1 |
Pig SNP position | 168045893 |
PubMed ID | 26220383 |
---|---|
Journal | Epilepsy Res |
Link | www.ncbi.nlm.nih.gov/pubmed/26220383 |
Study | GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy. |
Disease/Trait | Epilepsy and lamotrigine-induced maculopapular eruptions |
Initial sample | 34 Korean ancestry cases, 1,080 Korean ancestry healthy controls |
Replication sample | NA |
Region | 18q22.3 |
Chromosome id | chr18 |
Chromosome position | 71429162 |
Reported gene | LOC100505776 |
Mapped gene | LOC105372187 - LINC01541 |
Upstream gene id | 105372187 |
Downstream gene id | 100505776 |
SNP gene ids | |
Upstream gene distance | 211188 |
Downstream gene distance | 90802 |
SNP risk allele | rs17084405-A |
SNPs | rs17084405 |
Merged | |
SNP id current | 17084405 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.01 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | |
Or beta | 12.1 |
%95 Ci | [NR] |
Platform | Affymetrix [4893794] (imputed) |
CNV | N |
Mapped trait | response to lamotrigine, maculopapular eruption, epilepsy |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007661, http://www.ebi.ac.uk/efo/EFO_1001253, http://www.ebi.ac.uk/efo/EFO_0000474 |
Study accession | GCST002949 |