SNP Detail For rs17084405
1.Mapping Information
Human SNP ID rs17084405
Human chromosome chr18
Human SNP position 71429162
Pig chromosome chr1
Pig SNP position 168045893
2.Annotation Information
PubMed ID26220383
JournalEpilepsy Res
Linkwww.ncbi.nlm.nih.gov/pubmed/26220383
StudyGWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.
Disease/TraitEpilepsy and lamotrigine-induced maculopapular eruptions
Initial sample34 Korean ancestry cases, 1,080 Korean ancestry healthy controls
Replication sampleNA
Region18q22.3
Chromosome idchr18
Chromosome position71429162
Reported geneLOC100505776
Mapped geneLOC105372187 - LINC01541
Upstream gene id105372187
Downstream gene id100505776
SNP gene ids
Upstream gene distance211188
Downstream gene distance90802
SNP risk allelers17084405-A
SNPsrs17084405
Merged
SNP id current17084405
Contextintergenic_variant
Intergenic1
Allele frequency0.01
P value0.0000001
Pvalue mlog7
P value text
Or beta12.1
%95 Ci[NR]
PlatformAffymetrix [4893794] (imputed)
CNVN
Mapped traitresponse to lamotrigine, maculopapular eruption, epilepsy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007661, http://www.ebi.ac.uk/efo/EFO_1001253, http://www.ebi.ac.uk/efo/EFO_0000474
Study accessionGCST002949