SNP Detail For rs17083844
1.Mapping Information
Human SNP ID rs17083844
Human chromosome chr18
Human SNP position 71175007
Pig chromosome chr1
Pig SNP position 168202391
2.Annotation Information
PubMed ID18204098
JournalN Engl J Med
Linkwww.ncbi.nlm.nih.gov/pubmed/18204098
StudyAssociation of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.
Disease/TraitSystemic lupus erythematosus
Initial sample1,311 European ancestry cases, 3,340 European ancestry controls
Replication sample793 European ancestry cases, 857 European ancestry controls
Region18q22.3
Chromosome idchr18
Chromosome position71175007
Reported geneSOCS6
Mapped geneLOC105372185 - LOC105372188
Upstream gene id105372185
Downstream gene id105372188
SNP gene ids
Upstream gene distance388254
Downstream gene distance22951
SNP risk allelers17083844-A
SNPsrs17083844
Merged0
SNP id current17083844
Contextintergenic_variant
Intergenic1
Allele frequency0.03
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta
%95 Ci
PlatformIllumina [502033]
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST000144