Human SNP ID | rs17083844 |
---|---|
Human chromosome | chr18 |
Human SNP position | 71175007 |
Pig chromosome | chr1 |
Pig SNP position | 168202391 |
PubMed ID | 18204098 |
---|---|
Journal | N Engl J Med |
Link | www.ncbi.nlm.nih.gov/pubmed/18204098 |
Study | Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX. |
Disease/Trait | Systemic lupus erythematosus |
Initial sample | 1,311 European ancestry cases, 3,340 European ancestry controls |
Replication sample | 793 European ancestry cases, 857 European ancestry controls |
Region | 18q22.3 |
Chromosome id | chr18 |
Chromosome position | 71175007 |
Reported gene | SOCS6 |
Mapped gene | LOC105372185 - LOC105372188 |
Upstream gene id | 105372185 |
Downstream gene id | 105372188 |
SNP gene ids | |
Upstream gene distance | 388254 |
Downstream gene distance | 22951 |
SNP risk allele | rs17083844-A |
SNPs | rs17083844 |
Merged | 0 |
SNP id current | 17083844 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.03 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [502033] |
CNV | N |
Mapped trait | systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST000144 |