SNP Detail For rs17081935
1.Mapping Information
Human SNP ID rs17081935
Human chromosome chr4
Human SNP position 56957310
Pig chromosome chr8
Pig SNP position 57425782
2.Annotation Information
PubMed ID20881960
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/20881960
StudyHundreds of variants clustered in genomic loci and biological pathways affect human height.
Disease/TraitHeight
Initial sample133,653 European ancestry individuals
Replication sample50,074 European ancestry individuals
Region4q12
Chromosome idchr4
Chromosome position56957310
Reported genePOLR2B
Mapped geneREST - NOA1
Upstream gene id5978
Downstream gene id84273
SNP gene ids
Upstream gene distance21465
Downstream gene distance6040
SNP risk allelers17081935-T
SNPsrs17081935
Merged0
SNP id current17081935
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.2
P value0.00000000004
Pvalue mlog10.397940008672
P value text
Or beta0.03
%95 Ci[NR] unit increase
PlatformAffymetrix, Illumina [2834208] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000817
PubMed ID25282103
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25282103
StudyDefining the role of common variation in the genomic and biological architecture of adult human height.
Disease/TraitHeight
Initial sample253,288 European ancestry individuals
Replication sample80,067 European ancestry individuals
Region4q12
Chromosome idchr4
Chromosome position56957310
Reported geneC4orf14
Mapped geneREST - NOA1
Upstream gene id5978
Downstream gene id84273
SNP gene ids
Upstream gene distance21465
Downstream gene distance6040
SNP risk allelers17081935-T
SNPsrs17081935
Merged0
SNP id current17081935
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.195
P value0.00000000000000007
Pvalue mlog16.1549019599857
P value text
Or beta0.031
%95 Ci[0.023-0.039] unit increase
PlatformAffymetrix, Illumina, Perlegen [2550858] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST002647