Human SNP ID | rs17079534 |
---|---|
Human chromosome | chr3 |
Human SNP position | 39805581 |
Pig chromosome | chr13 |
Pig SNP position | 26652881 |
PubMed ID | 23007406 |
---|---|
Journal | Blood |
Link | www.ncbi.nlm.nih.gov/pubmed/23007406 |
Study | Genome-wide association study identifies germline polymorphisms associated with relapse of childhood acute lymphoblastic leukemia. |
Disease/Trait | Acute lymphoblastic leukemia (childhood) |
Initial sample | 1,268 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases |
Replication sample | 1,267 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases |
Region | 3p22.1 |
Chromosome id | chr3 |
Chromosome position | 39805581 |
Reported gene | MYRIP |
Mapped gene | LOC105377039 - MYRIP |
Upstream gene id | 105377039 |
Downstream gene id | 25924 |
SNP gene ids | |
Upstream gene distance | 2677 |
Downstream gene distance | 3333 |
SNP risk allele | rs17079534-A |
SNPs | rs17079534 |
Merged | 0 |
SNP id current | 17079534 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.005 |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | |
Or beta | 4.07 |
%95 Ci | [2.40-6.87] |
Platform | Affymetrix [444044] |
CNV | N |
Mapped trait | acute lymphoblastic leukemia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000220 |
Study accession | GCST001693 |