SNP Detail For rs17079534
1.Mapping Information
Human SNP ID rs17079534
Human chromosome chr3
Human SNP position 39805581
Pig chromosome chr13
Pig SNP position 26652881
2.Annotation Information
PubMed ID23007406
JournalBlood
Linkwww.ncbi.nlm.nih.gov/pubmed/23007406
StudyGenome-wide association study identifies germline polymorphisms associated with relapse of childhood acute lymphoblastic leukemia.
Disease/TraitAcute lymphoblastic leukemia (childhood)
Initial sample1,268 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases
Replication sample1,267 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases
Region3p22.1
Chromosome idchr3
Chromosome position39805581
Reported geneMYRIP
Mapped geneLOC105377039 - MYRIP
Upstream gene id105377039
Downstream gene id25924
SNP gene ids
Upstream gene distance2677
Downstream gene distance3333
SNP risk allelers17079534-A
SNPsrs17079534
Merged0
SNP id current17079534
Contextupstream_gene_variant
Intergenic1
Allele frequency0.005
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta4.07
%95 Ci[2.40-6.87]
PlatformAffymetrix [444044]
CNVN
Mapped traitacute lymphoblastic leukemia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000220
Study accessionGCST001693