SNP Detail For rs17073641
1.Mapping Information
Human SNP ID rs17073641
Human chromosome chr18
Human SNP position 64751208
Pig chromosome chr1
Pig SNP position 174736659
2.Annotation Information
PubMed ID23577725
JournalAnn Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23577725
StudyGenetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.
Disease/TraitAge-related macular degeneration (smoking status interaction)
Initial sample548 European ancestry ever smoking cases, 278 European ancestry ever smoking controls, 346 European ancestry never smoking cases, 247 European ancestry never smoking controls
Replication sampleNA
Region18q22.1
Chromosome idchr18
Chromosome position64751208
Reported geneintergenic
Mapped geneLOC105372167 - LOC101927404
Upstream gene id105372167
Downstream gene id101927404
SNP gene ids
Upstream gene distance119858
Downstream gene distance120664
SNP risk allelers17073641-C
SNPsrs17073641
Merged0
SNP id current17073641
Contextintergenic_variant
Intergenic1
Allele frequency0.45
P value0.0000001
Pvalue mlog7
P value text
Or beta
%95 Ci
PlatformAffymetrix [2543887] (imputed)
CNVN
Mapped traitage-related macular degeneration
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001365
Study accessionGCST001990