Human SNP ID | rs17073641 |
---|---|
Human chromosome | chr18 |
Human SNP position | 64751208 |
Pig chromosome | chr1 |
Pig SNP position | 174736659 |
PubMed ID | 23577725 |
---|---|
Journal | Ann Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23577725 |
Study | Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis. |
Disease/Trait | Age-related macular degeneration (smoking status interaction) |
Initial sample | 548 European ancestry ever smoking cases, 278 European ancestry ever smoking controls, 346 European ancestry never smoking cases, 247 European ancestry never smoking controls |
Replication sample | NA |
Region | 18q22.1 |
Chromosome id | chr18 |
Chromosome position | 64751208 |
Reported gene | intergenic |
Mapped gene | LOC105372167 - LOC101927404 |
Upstream gene id | 105372167 |
Downstream gene id | 101927404 |
SNP gene ids | |
Upstream gene distance | 119858 |
Downstream gene distance | 120664 |
SNP risk allele | rs17073641-C |
SNPs | rs17073641 |
Merged | 0 |
SNP id current | 17073641 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.45 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix [2543887] (imputed) |
CNV | N |
Mapped trait | age-related macular degeneration |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001365 |
Study accession | GCST001990 |