Human SNP ID | rs1706631 |
---|---|
Human chromosome | chr12 |
Human SNP position | 17509301 |
Pig chromosome | chr5 |
Pig SNP position | 58575987 |
PubMed ID | 23377640 |
---|---|
Journal | Am J Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/23377640 |
Study | Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies. |
Disease/Trait | Major depressive disorder |
Initial sample | Up to 2,256 European ancestry cases |
Replication sample | NA |
Region | 12p12.3 |
Chromosome id | chr12 |
Chromosome position | 17509301 |
Reported gene | intergenic |
Mapped gene | TIMM17BP1 - LOC105369678 |
Upstream gene id | 390298 |
Downstream gene id | 105369678 |
SNP gene ids | |
Upstream gene distance | 108110 |
Downstream gene distance | 72087 |
SNP risk allele | rs1706631-T |
SNPs | rs1706631 |
Merged | 0 |
SNP id current | 1706631 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.408 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | (partial response - 2 weeks) |
Or beta | 1.3548 |
%95 Ci | [1.22-1.49] |
Platform | Affymetrix, Illumina [1200000] (imputed) |
CNV | N |
Mapped trait | unipolar depression |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003761 |
Study accession | GCST001850 |