SNP Detail For rs1706631
1.Mapping Information
Human SNP ID rs1706631
Human chromosome chr12
Human SNP position 17509301
Pig chromosome chr5
Pig SNP position 58575987
2.Annotation Information
PubMed ID23377640
JournalAm J Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23377640
StudyCommon genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.
Disease/TraitMajor depressive disorder
Initial sampleUp to 2,256 European ancestry cases
Replication sampleNA
Region12p12.3
Chromosome idchr12
Chromosome position17509301
Reported geneintergenic
Mapped geneTIMM17BP1 - LOC105369678
Upstream gene id390298
Downstream gene id105369678
SNP gene ids
Upstream gene distance108110
Downstream gene distance72087
SNP risk allelers1706631-T
SNPsrs1706631
Merged0
SNP id current1706631
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.408
P value0.000006
Pvalue mlog5.22184874961635
P value text(partial response - 2 weeks)
Or beta1.3548
%95 Ci[1.22-1.49]
PlatformAffymetrix, Illumina [1200000] (imputed)
CNVN
Mapped traitunipolar depression
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003761
Study accessionGCST001850