Human SNP ID | rs17059531 |
---|---|
Human chromosome | chr9 |
Human SNP position | 73877511 |
Pig chromosome | chr1 |
Pig SNP position | 253672214 |
PubMed ID | 21844884 |
---|---|
Journal | Pharmacogenomics J |
Link | www.ncbi.nlm.nih.gov/pubmed/21844884 |
Study | Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations |
Disease/Trait | Response to platinum-based chemotherapy (carboplatin) |
Initial sample | 176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines |
Replication sample | NA |
Region | 9q21.13 |
Chromosome id | chr9 |
Chromosome position | 73877511 |
Reported gene | intergenic |
Mapped gene | LOC101927304 - LOC105376086 |
Upstream gene id | 101927304 |
Downstream gene id | 105376086 |
SNP gene ids | |
Upstream gene distance | 269157 |
Downstream gene distance | 46524 |
SNP risk allele | rs17059531-? |
SNPs | rs17059531 |
Merged | 0 |
SNP id current | 17059531 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | |
%95 Ci | |
Platform | NR [~ 3000000] (imputed) |
CNV | N |
Mapped trait | response to carboplatin |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097328 |
Study accession | GCST001204 |