SNP Detail For rs17059531
1.Mapping Information
Human SNP ID rs17059531
Human chromosome chr9
Human SNP position 73877511
Pig chromosome chr1
Pig SNP position 253672214
2.Annotation Information
PubMed ID21844884
JournalPharmacogenomics J
Linkwww.ncbi.nlm.nih.gov/pubmed/21844884
StudyGenome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations
Disease/TraitResponse to platinum-based chemotherapy (carboplatin)
Initial sample176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines
Replication sampleNA
Region9q21.13
Chromosome idchr9
Chromosome position73877511
Reported geneintergenic
Mapped geneLOC101927304 - LOC105376086
Upstream gene id101927304
Downstream gene id105376086
SNP gene ids
Upstream gene distance269157
Downstream gene distance46524
SNP risk allelers17059531-?
SNPsrs17059531
Merged0
SNP id current17059531
Contextupstream_gene_variant
Intergenic1
Allele frequency
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta
%95 Ci
PlatformNR [~ 3000000] (imputed)
CNVN
Mapped traitresponse to carboplatin
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097328
Study accessionGCST001204