SNP Detail For rs17057678
1.Mapping Information
Human SNP ID rs17057678
Human chromosome chr6
Human SNP position 129710348
Pig chromosome chr1
Pig SNP position 36935797
2.Annotation Information
PubMed ID22808956
JournalN Engl J Med
Linkwww.ncbi.nlm.nih.gov/pubmed/22808956
StudyGenetically distinct subsets within ANCA-associated vasculitis.
Disease/TraitAntineutrophil cytoplasmic antibody-associated vasculitis
Initial sample914 European ancestry cases, 5,259 European ancestry controls
Replication sample1,454 European ancestry cases, 1,666 European ancestry controls
Region6q22.33
Chromosome idchr6
Chromosome position129710348
Reported geneARHGAP18
Mapped geneARHGAP18 - B3GALNT2P1
Upstream gene id93663
Downstream gene id100130402
SNP gene ids
Upstream gene distance123
Downstream gene distance83676
SNP risk allelers17057678-?
SNPsrs17057678
Merged0
SNP id current17057678
Contextupstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.0000006
Pvalue mlog6.22184874961635
P value text
Or beta1.25
%95 Ci[NR]
PlatformAffymetrix [NR]
CNVN
Mapped traitanti-neutrophil antibody associated vasculitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004826
Study accessionGCST001613