Human SNP ID | rs17057678 |
---|---|
Human chromosome | chr6 |
Human SNP position | 129710348 |
Pig chromosome | chr1 |
Pig SNP position | 36935797 |
PubMed ID | 22808956 |
---|---|
Journal | N Engl J Med |
Link | www.ncbi.nlm.nih.gov/pubmed/22808956 |
Study | Genetically distinct subsets within ANCA-associated vasculitis. |
Disease/Trait | Antineutrophil cytoplasmic antibody-associated vasculitis |
Initial sample | 914 European ancestry cases, 5,259 European ancestry controls |
Replication sample | 1,454 European ancestry cases, 1,666 European ancestry controls |
Region | 6q22.33 |
Chromosome id | chr6 |
Chromosome position | 129710348 |
Reported gene | ARHGAP18 |
Mapped gene | ARHGAP18 - B3GALNT2P1 |
Upstream gene id | 93663 |
Downstream gene id | 100130402 |
SNP gene ids | |
Upstream gene distance | 123 |
Downstream gene distance | 83676 |
SNP risk allele | rs17057678-? |
SNPs | rs17057678 |
Merged | 0 |
SNP id current | 17057678 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000006 |
Pvalue mlog | 6.22184874961635 |
P value text | |
Or beta | 1.25 |
%95 Ci | [NR] |
Platform | Affymetrix [NR] |
CNV | N |
Mapped trait | anti-neutrophil antibody associated vasculitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004826 |
Study accession | GCST001613 |