SNP Detail For rs17042852
1.Mapping Information
Human SNP ID rs17042852
Human chromosome chr2
Human SNP position 52372929
Pig chromosome chr3
Pig SNP position 93988760
2.Annotation Information
PubMed ID26154020
JournalNeurobiol Aging
Linkwww.ncbi.nlm.nih.gov/pubmed/26154020
StudyA genome-wide screening and SNPs-to-genes approach to identify novel genetic risk factors associated with frontotemporal dementia.
Disease/TraitFrontotemporal dementia
Initial sample530 European ancestry cases, 926 European ancestry controls
Replication sampleNA
Region2p16.3
Chromosome idchr2
Chromosome position52372929
Reported geneLOC730100
Mapped geneLOC730100, LOC105374596
Upstream gene id
Downstream gene id
SNP gene ids730100, 105374596
Upstream gene distance
Downstream gene distance
SNP risk allelers17042852-C
SNPsrs17042852
Merged
SNP id current17042852
Contextintron_variant
Intergenic0
Allele frequency0.04
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta2.82
%95 Ci[1.91-4.18]
PlatformIllumina [2292247] (imputed)
CNVN
Mapped traitFrontotemporal dementia
Mapped trait URIhttp://www.orpha.net/ORDO/Orphanet_282
Study accessionGCST002960