Human SNP ID | rs17042688 |
---|---|
Human chromosome | chr2 |
Human SNP position | 52284656 |
Pig chromosome | chr3 |
Pig SNP position | 94047577 |
PubMed ID | 23518928 |
---|---|
Journal | Mol Endocrinol |
Link | www.ncbi.nlm.nih.gov/pubmed/23518928 |
Study | TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression. |
Disease/Trait | Estradiol plasma levels (breast cancer) |
Initial sample | 700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases |
Replication sample | NA |
Region | 2p16.3 |
Chromosome id | chr2 |
Chromosome position | 52284656 |
Reported gene | NR |
Mapped gene | LOC730100 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 730100 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17042688-? |
SNPs | rs17042688 |
Merged | 0 |
SNP id current | 17042688 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.038 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 1.911 |
%95 Ci | [1.474-2.476] unit increase |
Platform | Illumina [563945] |
CNV | N |
Mapped trait | estradiol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004697 |
Study accession | GCST001914 |