SNP Detail For rs17042688
1.Mapping Information
Human SNP ID rs17042688
Human chromosome chr2
Human SNP position 52284656
Pig chromosome chr3
Pig SNP position 94047577
2.Annotation Information
PubMed ID23518928
JournalMol Endocrinol
Linkwww.ncbi.nlm.nih.gov/pubmed/23518928
StudyTSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.
Disease/TraitEstradiol plasma levels (breast cancer)
Initial sample700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases
Replication sampleNA
Region2p16.3
Chromosome idchr2
Chromosome position52284656
Reported geneNR
Mapped geneLOC730100
Upstream gene id
Downstream gene id
SNP gene ids730100
Upstream gene distance
Downstream gene distance
SNP risk allelers17042688-?
SNPsrs17042688
Merged0
SNP id current17042688
Contextintron_variant
Intergenic0
Allele frequency0.038
P value0.000001
Pvalue mlog6
P value text
Or beta1.911
%95 Ci[1.474-2.476] unit increase
PlatformIllumina [563945]
CNVN
Mapped traitestradiol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004697
Study accessionGCST001914