SNP Detail For rs17042171
1.Mapping Information
Human SNP ID rs17042171
Human chromosome chr4
Human SNP position 110787131
Pig chromosome chr8
Pig SNP position 119579780
2.Annotation Information
PubMed ID19597492
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19597492
StudyVariants in ZFHX3 are associated with atrial fibrillation in individuals of European ancestry.
Disease/TraitAtrial fibrillation
Initial sample3,413 cases, 37,105 referents
Replication sample2,145 cases, 4,073 controls
Region4q25
Chromosome idchr4
Chromosome position110787131
Reported genePITX2
Mapped genePITX2 - MIR297
Upstream gene id5308
Downstream gene id100126354
SNP gene ids
Upstream gene distance145008
Downstream gene distance73451
SNP risk allelers17042171-A
SNPsrs17042171
Merged0
SNP id current17042171
Contextregulatory_region_variant
Intergenic1
Allele frequency0.12
P value4E-63
Pvalue mlog62.397940008672
P value text
Or beta1.65
%95 Ci
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitatrial fibrillation
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000275
Study accessionGCST000445