SNP Detail For rs17040773
1.Mapping Information
Human SNP ID rs17040773
Human chromosome chr2
Human SNP position 111742458
Pig chromosome chr3
Pig SNP position 46416610
2.Annotation Information
PubMed ID22504420
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22504420
StudyGenome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.
Disease/TraitBone mineral density
Initial sampleUp to 32,961 European and East Asian ancestry individuals
Replication sampleUp to 50,933 European and East Asian ancestry individuals
Region2q13
Chromosome idchr2
Chromosome position111742458
Reported geneANAPC1
Mapped geneLOC105373987 - ANAPC1
Upstream gene id105373987
Downstream gene id64682
SNP gene ids
Upstream gene distance20124
Downstream gene distance25179
SNP risk allelers17040773-A
SNPsrs17040773
Merged0
SNP id current17040773
Contextupstream_gene_variant
Intergenic1
Allele frequency0.76
P value0.000000002
Pvalue mlog8.69897000433601
P value text(FNBMD)
Or beta0.04
%95 Ci[NR] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitbone density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003923
Study accessionGCST001482