SNP Detail For rs17040430
1.Mapping Information
Human SNP ID rs17040430
Human chromosome chr12
Human SNP position 108349043
Pig chromosome chr14
Pig SNP position 44954244
2.Annotation Information
PubMed ID22688191
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/22688191
StudyGenome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.
Disease/TraitBipolar disorder
Initial sample836 European ancestry cases, 2,093 European ancestry controls
Replication sampleNA
Region12q23.3
Chromosome idchr12
Chromosome position108349043
Reported geneCMKLR1
Mapped geneCMKLR1 - LINC01498
Upstream gene id1240
Downstream gene id102723562
SNP gene ids
Upstream gene distance9726
Downstream gene distance110382
SNP risk allelers17040430-T
SNPsrs17040430
Merged0
SNP id current17040430
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000009
Pvalue mlog6.04575749056067
P value text
Or beta1.89
%95 Ci[NR]
PlatformAffymetrix [745006]
CNVN
Mapped traitbipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST001569