Human SNP ID | rs17039212 |
---|---|
Human chromosome | chr2 |
Human SNP position | 49728359 |
Pig chromosome | chr3 |
Pig SNP position | 96824181 |
PubMed ID | 19165918 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19165918 |
Study | Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus. |
Disease/Trait | Systemic lupus erythematosus |
Initial sample | 431 European ancestry cases, 2,155 European ancestry controls |
Replication sample | 447 European ancestry trios, 293 trios |
Region | 2p16.3 |
Chromosome id | chr2 |
Chromosome position | 49728359 |
Reported gene | intergenic |
Mapped gene | LOC105374595 - RPL7P13 |
Upstream gene id | 105374595 |
Downstream gene id | 130728 |
SNP gene ids | |
Upstream gene distance | 315227 |
Downstream gene distance | 150253 |
SNP risk allele | rs17039212-? |
SNPs | rs17039212 |
Merged | 0 |
SNP id current | 17039212 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.1 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | |
Or beta | |
%95 Ci | [NR] |
Platform | Affymetrix [313238] |
CNV | N |
Mapped trait | systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST000216 |