SNP Detail For rs17039212
1.Mapping Information
Human SNP ID rs17039212
Human chromosome chr2
Human SNP position 49728359
Pig chromosome chr3
Pig SNP position 96824181
2.Annotation Information
PubMed ID19165918
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19165918
StudyGenetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.
Disease/TraitSystemic lupus erythematosus
Initial sample431 European ancestry cases, 2,155 European ancestry controls
Replication sample447 European ancestry trios, 293 trios
Region2p16.3
Chromosome idchr2
Chromosome position49728359
Reported geneintergenic
Mapped geneLOC105374595 - RPL7P13
Upstream gene id105374595
Downstream gene id130728
SNP gene ids
Upstream gene distance315227
Downstream gene distance150253
SNP risk allelers17039212-?
SNPsrs17039212
Merged0
SNP id current17039212
Contextintergenic_variant
Intergenic1
Allele frequency0.1
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta
%95 Ci[NR]
PlatformAffymetrix [313238]
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST000216