Human SNP ID | rs17034687 |
---|---|
Human chromosome | chr3 |
Human SNP position | 3638168 |
Pig chromosome | chr13 |
Pig SNP position | 66415191 |
PubMed ID | 22993228 |
---|---|
Journal | Ann Rheum Dis |
Link | www.ncbi.nlm.nih.gov/pubmed/22993228 |
Study | Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects. |
Disease/Trait | Disc degeneration (lumbar) |
Initial sample | 4,683 European ancestry individuals |
Replication sample | NA |
Region | 3p26.2 |
Chromosome id | chr3 |
Chromosome position | 3638168 |
Reported gene | intergenic |
Mapped gene | LOC105376928 - LOC100130207 |
Upstream gene id | 105376928 |
Downstream gene id | 100130207 |
SNP gene ids | |
Upstream gene distance | 255518 |
Downstream gene distance | 46636 |
SNP risk allele | rs17034687-C |
SNPs | rs17034687 |
Merged | 0 |
SNP id current | 17034687 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.09 |
P value | 0.000000002 |
Pvalue mlog | 8.69897000433601 |
P value text | |
Or beta | 0.23 |
%95 Ci | [0.16-0.30] unit increase |
Platform | Affymetrix, Illumina [2552511] (imputed) |
CNV | N |
Mapped trait | lumbar disc degeneration |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004994 |
Study accession | GCST001687 |