SNP Detail For rs17034687
1.Mapping Information
Human SNP ID rs17034687
Human chromosome chr3
Human SNP position 3638168
Pig chromosome chr13
Pig SNP position 66415191
2.Annotation Information
PubMed ID22993228
JournalAnn Rheum Dis
Linkwww.ncbi.nlm.nih.gov/pubmed/22993228
StudyNovel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.
Disease/TraitDisc degeneration (lumbar)
Initial sample4,683 European ancestry individuals
Replication sampleNA
Region3p26.2
Chromosome idchr3
Chromosome position3638168
Reported geneintergenic
Mapped geneLOC105376928 - LOC100130207
Upstream gene id105376928
Downstream gene id100130207
SNP gene ids
Upstream gene distance255518
Downstream gene distance46636
SNP risk allelers17034687-C
SNPsrs17034687
Merged0
SNP id current17034687
Contextintergenic_variant
Intergenic1
Allele frequency0.09
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta0.23
%95 Ci[0.16-0.30] unit increase
PlatformAffymetrix, Illumina [2552511] (imputed)
CNVN
Mapped traitlumbar disc degeneration
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004994
Study accessionGCST001687