Human SNP ID | rs17027258 |
---|---|
Human chromosome | chr2 |
Human SNP position | 102475081 |
Pig chromosome | chr3 |
Pig SNP position | 54227719 |
PubMed ID | 21738478 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21738478 |
Study | Identification of nine novel loci associated with white blood cell subtypes in a Japanese population. |
Disease/Trait | White blood cell types |
Initial sample | 8,794 Japanese ancestry individuals |
Replication sample | 5,998 Japanese ancestry individuals |
Region | 2q12.1 |
Chromosome id | chr2 |
Chromosome position | 102475081 |
Reported gene | SLC9A4 |
Mapped gene | SLC9A4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 389015 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17027258-G |
SNPs | rs17027258 |
Merged | 0 |
SNP id current | 17027258 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.37 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | (eosinophil count) |
Or beta | 0.055 |
%95 Ci | [0.04-0.08] unit decrease |
Platform | Illumina [2178645] (imputed) |
CNV | N |
Mapped trait | eosinophil count |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004842 |
Study accession | GCST001134 |