SNP Detail For rs17027258
1.Mapping Information
Human SNP ID rs17027258
Human chromosome chr2
Human SNP position 102475081
Pig chromosome chr3
Pig SNP position 54227719
2.Annotation Information
PubMed ID21738478
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21738478
StudyIdentification of nine novel loci associated with white blood cell subtypes in a Japanese population.
Disease/TraitWhite blood cell types
Initial sample8,794 Japanese ancestry individuals
Replication sample5,998 Japanese ancestry individuals
Region2q12.1
Chromosome idchr2
Chromosome position102475081
Reported geneSLC9A4
Mapped geneSLC9A4
Upstream gene id
Downstream gene id
SNP gene ids389015
Upstream gene distance
Downstream gene distance
SNP risk allelers17027258-G
SNPsrs17027258
Merged0
SNP id current17027258
Contextintron_variant
Intergenic0
Allele frequency0.37
P value0.000007
Pvalue mlog5.15490195998574
P value text(eosinophil count)
Or beta0.055
%95 Ci[0.04-0.08] unit decrease
PlatformIllumina [2178645] (imputed)
CNVN
Mapped traiteosinophil count
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004842
Study accessionGCST001134