Human SNP ID | rs17026425 |
---|---|
Human chromosome | chr4 |
Human SNP position | 149751362 |
Pig chromosome | chr8 |
Pig SNP position | 84024648 |
PubMed ID | 25866641 |
---|---|
Journal | Biomark Res |
Link | www.ncbi.nlm.nih.gov/pubmed/25866641 |
Study | A genome wide association study on Newfoundland colorectal cancer patients__ survival outcomes. |
Disease/Trait | Survival in rectal cancer |
Initial sample | 171 European ancestry cases |
Replication sample | NA |
Region | 4q31.23 |
Chromosome id | chr4 |
Chromosome position | 149751362 |
Reported gene | intergenic |
Mapped gene | LOC285423 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 285423 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17026425-? |
SNPs | rs17026425 |
Merged | 0 |
SNP id current | 17026425 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.0000007 |
Pvalue mlog | 6.15490195998574 |
P value text | (overall survival) |
Or beta | 5.06 |
%95 Ci | [2.67-9.60] |
Platform | Illumina [729737] |
CNV | N |
Mapped trait | rectum cancer, overall survival |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_1000657, http://www.ebi.ac.uk/efo/EFO_0000638 |
Study accession | GCST002821 |