SNP Detail For rs17026425
1.Mapping Information
Human SNP ID rs17026425
Human chromosome chr4
Human SNP position 149751362
Pig chromosome chr8
Pig SNP position 84024648
2.Annotation Information
PubMed ID25866641
JournalBiomark Res
Linkwww.ncbi.nlm.nih.gov/pubmed/25866641
StudyA genome wide association study on Newfoundland colorectal cancer patients__ survival outcomes.
Disease/TraitSurvival in rectal cancer
Initial sample171 European ancestry cases
Replication sampleNA
Region4q31.23
Chromosome idchr4
Chromosome position149751362
Reported geneintergenic
Mapped geneLOC285423
Upstream gene id
Downstream gene id
SNP gene ids285423
Upstream gene distance
Downstream gene distance
SNP risk allelers17026425-?
SNPsrs17026425
Merged0
SNP id current17026425
Contextintron_variant
Intergenic0
Allele frequency
P value0.0000007
Pvalue mlog6.15490195998574
P value text(overall survival)
Or beta5.06
%95 Ci[2.67-9.60]
PlatformIllumina [729737]
CNVN
Mapped traitrectum cancer, overall survival
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_1000657, http://www.ebi.ac.uk/efo/EFO_0000638
Study accessionGCST002821