SNP Detail For rs17025867
1.Mapping Information
Human SNP ID rs17025867
Human chromosome chr2
Human SNP position 40351419
Pig chromosome chr3
Pig SNP position 106094545
2.Annotation Information
PubMed ID23563609
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23563609
StudyGenome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.
Disease/TraitObesity (early onset extreme)
Initial sample1,509 European ancestry cases, 5,380 European ancestry controls
Replication sample971 European ancestry cases, 1,990 European ancestry controls
Region2p22.1
Chromosome idchr2
Chromosome position40351419
Reported geneSLC8A1
Mapped geneSLC8A1
Upstream gene id
Downstream gene id
SNP gene ids6546
Upstream gene distance
Downstream gene distance
SNP risk allelers17025867-A
SNPsrs17025867
Merged0
SNP id current17025867
Contextintron_variant
Intergenic0
Allele frequency0.02
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta1.81
%95 Ci[1.45-2.27]
PlatformAffymetrix [~ 2000000] (imputed)
CNVN
Mapped traitobesity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001073
Study accessionGCST001957