SNP Detail For rs17021463
1.Mapping Information
Human SNP ID rs17021463
Human chromosome chr4
Human SNP position 94303661
Pig chromosome chr8
Pig SNP position 134685520
2.Annotation Information
PubMed ID23666239
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23666239
StudyMeta-analysis identifies four new loci associated with testicular germ cell tumor.
Disease/TraitTesticular germ cell tumor
Initial sample582 European ancestry male cases, 1,056 European ancestry male controls
Replication sample3,560 European ancestry male cases, 8,510 European ancestry male controls
Region4q22.3
Chromosome idchr4
Chromosome position94303661
Reported geneSMARCAD1, HPGDS
Mapped geneHPGDS
Upstream gene id
Downstream gene id
SNP gene ids27306
Upstream gene distance
Downstream gene distance
SNP risk allelers17021463-T
SNPsrs17021463
Merged0
SNP id current17021463
Contextintron_variant
Intergenic0
Allele frequency0.42
P value0.00000001
Pvalue mlog8
P value text
Or beta1.19
%95 Ci[1.12-1.26]
PlatformIllumina [NR]
CNVN
Mapped traittesticular carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005088
Study accessionGCST002023