Human SNP ID | rs17021463 |
---|---|
Human chromosome | chr4 |
Human SNP position | 94303661 |
Pig chromosome | chr8 |
Pig SNP position | 134685520 |
PubMed ID | 23666239 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23666239 |
Study | Meta-analysis identifies four new loci associated with testicular germ cell tumor. |
Disease/Trait | Testicular germ cell tumor |
Initial sample | 582 European ancestry male cases, 1,056 European ancestry male controls |
Replication sample | 3,560 European ancestry male cases, 8,510 European ancestry male controls |
Region | 4q22.3 |
Chromosome id | chr4 |
Chromosome position | 94303661 |
Reported gene | SMARCAD1, HPGDS |
Mapped gene | HPGDS |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 27306 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17021463-T |
SNPs | rs17021463 |
Merged | 0 |
SNP id current | 17021463 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.42 |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | |
Or beta | 1.19 |
%95 Ci | [1.12-1.26] |
Platform | Illumina [NR] |
CNV | N |
Mapped trait | testicular carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005088 |
Study accession | GCST002023 |