Human SNP ID | rs17019602 |
---|---|
Human chromosome | chr1 |
Human SNP position | 107646236 |
Pig chromosome | chr4 |
Pig SNP position | 122909480 |
PubMed ID | 25305756 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25305756 |
Study | Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens. |
Disease/Trait | IgA nephropathy |
Initial sample | 1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls |
Replication sample | 2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls |
Region | 1p13.3 |
Chromosome id | chr1 |
Chromosome position | 107646236 |
Reported gene | VAV3 |
Mapped gene | VAV3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10451 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17019602-G |
SNPs | rs17019602 |
Merged | 0 |
SNP id current | 17019602 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.19 |
P value | 0.000000007 |
Pvalue mlog | 8.15490195998574 |
P value text | |
Or beta | 1.17 |
%95 Ci | [NR] |
Platform | Illumina [> 1000000] (imputed) |
CNV | N |
Mapped trait | IGA glomerulonephritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004194 |
Study accession | GCST002655 |
PubMed ID | 25305756 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25305756 |
Study | Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens. |
Disease/Trait | IgA nephropathy |
Initial sample | 1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls |
Replication sample | 2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls |
Region | 1p13.3 |
Chromosome id | chr1 |
Chromosome position | 107646236 |
Reported gene | VAV3 |
Mapped gene | VAV3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10451 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17019602-G |
SNPs | rs17019602 |
Merged | 0 |
SNP id current | 17019602 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.19 |
P value | 0.0000008 |
Pvalue mlog | 6.09691001300805 |
P value text | (EA) |
Or beta | 1.19 |
%95 Ci | [NR] |
Platform | Illumina [> 1000000] (imputed) |
CNV | N |
Mapped trait | IGA glomerulonephritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004194 |
Study accession | GCST002655 |