SNP Detail For rs17013524
1.Mapping Information
Human SNP ID rs17013524
Human chromosome chr3
Human SNP position 2381443
Pig chromosome chr13
Pig SNP position 65066795
2.Annotation Information
PubMed ID24556642
JournalCaries Res
Linkwww.ncbi.nlm.nih.gov/pubmed/24556642
StudyGenome-Wide Association Study of Primary Dentition Pit-and-Fissure and Smooth Surface Caries.
Disease/TraitPit-and-Fissure caries
Initial sample979 European ancestry individuals
Replication sampleNA
Region3p26.3
Chromosome idchr3
Chromosome position2381443
Reported geneCNTN4
Mapped geneCNTN4
Upstream gene id
Downstream gene id
SNP gene ids152330
Upstream gene distance
Downstream gene distance
SNP risk allelers17013524-T
SNPsrs17013524
Merged0
SNP id current17013524
Contextintron_variant
Intergenic0
Allele frequency0.0578
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta1.833
%95 Ci[NR] unit decrease
PlatformIllumina [1216074] (imputed)
CNVN
Mapped traitpit and fissure surface dental caries
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006338
Study accessionGCST002358