SNP Detail For rs17009617
1.Mapping Information
Human SNP ID rs17009617
Human chromosome chr10
Human SNP position 49245888
Pig chromosome chr14
Pig SNP position 97757214
2.Annotation Information
PubMed ID24823311
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24823311
StudyGenome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.
Disease/TraitPlasma omega-6 polyunsaturated fatty acid levels (linoleic acid)
Initial sample8,631 European ancestry individuals
Replication sampleNA
Region10q11.23
Chromosome idchr10
Chromosome position49245888
Reported geneC10orf71
Mapped geneC10orf128 - C10orf71-AS1
Upstream gene id170371
Downstream gene id100506769
SNP gene ids
Upstream gene distance57303
Downstream gene distance50395
SNP risk allelers17009617-A
SNPsrs17009617
Merged0
SNP id current17009617
Contextintergenic_variant
Intergenic1
Allele frequency0.055
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta0.45
%95 Ci[NR] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitomega-6 polyunsaturated fatty acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005680
Study accessionGCST002446