SNP Detail For rs17008402
1.Mapping Information
Human SNP ID rs17008402
Human chromosome chr3
Human SNP position 71251416
Pig chromosome chr13
Pig SNP position 58297942
2.Annotation Information
PubMed ID22589738
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22589738
StudyGenome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
Disease/TraitSubcutaneous adipose tissue
Initial sample5,560 European ancestry female individuals, 4,997 European ancestry male individuals
Replication sampleNA
Region3p13
Chromosome idchr3
Chromosome position71251416
Reported geneFOXP1
Mapped geneFOXP1
Upstream gene id
Downstream gene id
SNP gene ids27086
Upstream gene distance
Downstream gene distance
SNP risk allelers17008402-G
SNPsrs17008402
Merged0
SNP id current17008402
Contextintron_variant
Intergenic0
Allele frequency0.31
P value0.000002
Pvalue mlog5.69897000433601
P value text(overall)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traitsubcutaneous adipose tissue measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004766
Study accessionGCST001521