Human SNP ID | rs17008402 |
---|---|
Human chromosome | chr3 |
Human SNP position | 71251416 |
Pig chromosome | chr13 |
Pig SNP position | 58297942 |
PubMed ID | 22589738 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22589738 |
Study | Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. |
Disease/Trait | Subcutaneous adipose tissue |
Initial sample | 5,560 European ancestry female individuals, 4,997 European ancestry male individuals |
Replication sample | NA |
Region | 3p13 |
Chromosome id | chr3 |
Chromosome position | 71251416 |
Reported gene | FOXP1 |
Mapped gene | FOXP1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 27086 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs17008402-G |
SNPs | rs17008402 |
Merged | 0 |
SNP id current | 17008402 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.31 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (overall) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | subcutaneous adipose tissue measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004766 |
Study accession | GCST001521 |