SNP Detail For rs16997087
1.Mapping Information
Human SNP ID rs16997087
Human chromosome chr20
Human SNP position 16074337
Pig chromosome chr17
Pig SNP position 27889430
2.Annotation Information
PubMed ID23471985
JournalProc Natl Acad Sci U S A
Linkwww.ncbi.nlm.nih.gov/pubmed/23471985
StudyGenome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.
Disease/TraitBrain connectivity
Initial sample331 European ancestry individuals
Replication sample
Region20p12.1
Chromosome idchr20
Chromosome position16074337
Reported geneMACROD2
Mapped geneMACROD2 - KIF16B
Upstream gene id140733
Downstream gene id55614
SNP gene ids
Upstream gene distance21140
Downstream gene distance197760
SNP risk allelers16997087-?
SNPsrs16997087
Merged0
SNP id current16997087
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000000001
Pvalue mlog10
P value text(Strength - R paracentral)
Or beta
%95 Ci
PlatformIllumina [428287]
CNVN
Mapped traitbrain connectivity measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005210
Study accessionGCST001889
PubMed ID23471985
JournalProc Natl Acad Sci U S A
Linkwww.ncbi.nlm.nih.gov/pubmed/23471985
StudyGenome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.
Disease/TraitBrain connectivity
Initial sample331 European ancestry individuals
Replication sample
Region20p12.1
Chromosome idchr20
Chromosome position16074337
Reported geneMACROD2
Mapped geneMACROD2 - KIF16B
Upstream gene id140733
Downstream gene id55614
SNP gene ids
Upstream gene distance21140
Downstream gene distance197760
SNP risk allelers16997087-?
SNPsrs16997087
Merged0
SNP id current16997087
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000000002
Pvalue mlog8.69897000433601
P value text(Efficiency - R-paracentral)
Or beta
%95 Ci
PlatformIllumina [428287]
CNVN
Mapped traitbrain connectivity measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005210
Study accessionGCST001889