Human SNP ID | rs16997087 |
---|---|
Human chromosome | chr20 |
Human SNP position | 16074337 |
Pig chromosome | chr17 |
Pig SNP position | 27889430 |
PubMed ID | 23471985 |
---|---|
Journal | Proc Natl Acad Sci U S A |
Link | www.ncbi.nlm.nih.gov/pubmed/23471985 |
Study | Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity. |
Disease/Trait | Brain connectivity |
Initial sample | 331 European ancestry individuals |
Replication sample | |
Region | 20p12.1 |
Chromosome id | chr20 |
Chromosome position | 16074337 |
Reported gene | MACROD2 |
Mapped gene | MACROD2 - KIF16B |
Upstream gene id | 140733 |
Downstream gene id | 55614 |
SNP gene ids | |
Upstream gene distance | 21140 |
Downstream gene distance | 197760 |
SNP risk allele | rs16997087-? |
SNPs | rs16997087 |
Merged | 0 |
SNP id current | 16997087 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000000001 |
Pvalue mlog | 10 |
P value text | (Strength - R paracentral) |
Or beta | |
%95 Ci | |
Platform | Illumina [428287] |
CNV | N |
Mapped trait | brain connectivity measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005210 |
Study accession | GCST001889 |
PubMed ID | 23471985 |
Journal | Proc Natl Acad Sci U S A |
Link | www.ncbi.nlm.nih.gov/pubmed/23471985 |
Study | Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity. |
Disease/Trait | Brain connectivity |
Initial sample | 331 European ancestry individuals |
Replication sample | |
Region | 20p12.1 |
Chromosome id | chr20 |
Chromosome position | 16074337 |
Reported gene | MACROD2 |
Mapped gene | MACROD2 - KIF16B |
Upstream gene id | 140733 |
Downstream gene id | 55614 |
SNP gene ids | |
Upstream gene distance | 21140 |
Downstream gene distance | 197760 |
SNP risk allele | rs16997087-? |
SNPs | rs16997087 |
Merged | 0 |
SNP id current | 16997087 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000000002 |
Pvalue mlog | 8.69897000433601 |
P value text | (Efficiency - R-paracentral) |
Or beta | |
%95 Ci | |
Platform | Illumina [428287] |
CNV | N |
Mapped trait | brain connectivity measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005210 |
Study accession | GCST001889 |