SNP Detail For rs1699346
1.Mapping Information
Human SNP ID rs1699346
Human chromosome chr3
Human SNP position 12462796
Pig chromosome chr13
Pig SNP position 75675787
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region3p25.2
Chromosome idchr3
Chromosome position12462796
Reported geneIntergenic
Mapped genePPARG
Upstream gene id
Downstream gene id
SNP gene ids5468
Upstream gene distance
Downstream gene distance
SNP risk allelers1699346-A
SNPsrs1699346
Merged0
SNP id current1699346
Contextregulatory_region_variant
Intergenic0
Allele frequency0.601
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta0.008
%95 Ciunit decrease
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003264