SNP Detail For rs16989979
1.Mapping Information
Human SNP ID rs16989979
Human chromosome chr4
Human SNP position 34543724
Pig chromosome chr8
Pig SNP position 27791713
2.Annotation Information
PubMed ID25188341
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25188341
StudyGenome-Wide Association Meta-analysis of Neuropathologic Features of Alzheimer__s Disease and Related Dementias.
Disease/TraitCerebral amyloid angiopathy
Initial sample1,673 cases, 1,134 controls
Replication sampleNA
Region4p15.1
Chromosome idchr4
Chromosome position34543724
Reported geneintergenic
Mapped geneLOC105374394 - LOC105374395
Upstream gene id105374394
Downstream gene id105374395
SNP gene ids
Upstream gene distance273982
Downstream gene distance478508
SNP risk allelers16989979-T
SNPsrs16989979
Merged0
SNP id current16989979
Contextintergenic_variant
Intergenic1
Allele frequency0.2408
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.3325
%95 Ci[0.2-0.47] unit decrease
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitcerebral amyloid angiopathy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006790
Study accessionGCST002588