SNP Detail For rs16986953
1.Mapping Information
Human SNP ID rs16986953
Human chromosome chr2
Human SNP position 19742712
Pig chromosome chr3
Pig SNP position 126436139
2.Annotation Information
PubMed ID26343387
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26343387
StudyA comprehensive 1000 Genomes-based genome-wide association meta-analysis of coronary artery disease.
Disease/TraitCoronary artery disease
Initial sample42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls,
Replication sampleNA
Region2p24.1
Chromosome idchr2
Chromosome position19742712
Reported geneAK097927
Mapped geneLOC105373461 - LINC00954
Upstream gene id105373461
Downstream gene id400946
SNP gene ids
Upstream gene distance25241
Downstream gene distance126142
SNP risk allelers16986953-A
SNPsrs16986953
Merged
SNP id current16986953
Contextintergenic_variant
Intergenic1
Allele frequency0.104706
P value0.00000001
Pvalue mlog8
P value text
Or beta1.09
%95 Ci[1.06- 1.12]
PlatformAffymetrix, Illumina [8600000] (imputed)
CNVN
Mapped traitcoronary artery disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000378
Study accessionGCST003116
PubMed ID26343387
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26343387
StudyA comprehensive 1000 Genomes-based genome-wide association meta-analysis of coronary artery disease.
Disease/TraitMyocardial infarction
Initial sample27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3
Replication sampleNA
Region2p24.1
Chromosome idchr2
Chromosome position19742712
Reported geneAK097927
Mapped geneLOC105373461 - LINC00954
Upstream gene id105373461
Downstream gene id400946
SNP gene ids
Upstream gene distance25241
Downstream gene distance126142
SNP risk allelers16986953-A
SNPsrs16986953
Merged
SNP id current16986953
Contextintergenic_variant
Intergenic1
Allele frequency0.09
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.08
%95 Ci[1.05-1.12]
PlatformAffymetrix, Illumina [8600000] (imputed)
CNVN
Mapped traitmyocardial infarction
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000612
Study accessionGCST003117