SNP Detail For rs16985493
1.Mapping Information
Human SNP ID rs16985493
Human chromosome chr20
Human SNP position 61718507
Pig chromosome chr17
Pig SNP position 68830575
2.Annotation Information
PubMed ID23793025
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23793025
StudyGenome-wide meta-analysis identifies new susceptibility loci for migraine.
Disease/TraitMigraine - clinic-based
Initial sample5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls
Replication sampleNA
Region20q13.33
Chromosome idchr20
Chromosome position61718507
Reported geneintergenic
Mapped geneCDH4
Upstream gene id
Downstream gene id
SNP gene ids1002
Upstream gene distance
Downstream gene distance
SNP risk allelers16985493-A
SNPsrs16985493
Merged0
SNP id current16985493
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.04
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta1.37
%95 Ci[1.20-1.57]
PlatformAffymetrix, Illumina [~ 2300000] (imputed)
CNVN
Mapped traitmigraine disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003821
Study accessionGCST002079