Human SNP ID | rs16984239 |
---|---|
Human chromosome | chr2 |
Human SNP position | 18053180 |
Pig chromosome | chr3 |
Pig SNP position | 128010820 |
PubMed ID | 17362836 |
---|---|
Journal | Lancet Neurol |
Link | www.ncbi.nlm.nih.gov/pubmed/17362836 |
Study | Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data. |
Disease/Trait | Amyotrophic lateral sclerosis |
Initial sample | 276 European ancestry cases, 271 European ancestry controls |
Replication sample | NA |
Region | 2p24.2 |
Chromosome id | chr2 |
Chromosome position | 18053180 |
Reported gene | intergenic |
Mapped gene | KCNS3 - LOC105373451 |
Upstream gene id | 3790 |
Downstream gene id | 105373451 |
SNP gene ids | |
Upstream gene distance | 120219 |
Downstream gene distance | 227187 |
SNP risk allele | rs16984239-? |
SNPs | rs16984239 |
Merged | 0 |
SNP id current | 16984239 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 2.1 |
%95 Ci | [1.50-3.00] |
Platform | Illumina [549062] |
CNV | N |
Mapped trait | amyotrophic lateral sclerosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000253 |
Study accession | GCST000013 |