SNP Detail For rs16977195
1.Mapping Information
Human SNP ID rs16977195
Human chromosome chr15
Human SNP position 86441009
Pig chromosome chr1
Pig SNP position 214776670
2.Annotation Information
PubMed ID18347602
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/18347602
StudyGenomewide association for schizophrenia in the CATIE study: results of stage 1.
Disease/TraitSchizophrenia
Initial sample417 European ancestry cases, 411 European ancestry controls, 217 African American cases, 219 African American controls, 104 American Indian, Asian, Pacific Islander or Hispanic/Latino ancestry cases, 103 American Indian, Asian, Pacific Islander or Hispani
Replication sampleNA
Region15q25.3
Chromosome idchr15
Chromosome position86441009
Reported geneAGBL1
Mapped geneAGBL1
Upstream gene id
Downstream gene id
SNP gene ids123624
Upstream gene distance
Downstream gene distance
SNP risk allelers16977195-?
SNPsrs16977195
Merged0
SNP id current16977195
Contextintron_variant
Intergenic0
Allele frequency0.03
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta6.01
%95 Ci[NR]
PlatformAffymetrix [492900]
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST000164