SNP Detail For rs1697621
1.Mapping Information
Human SNP ID rs1697621
Human chromosome chr1
Human SNP position 210907839
Pig chromosome chr9
Pig SNP position 145227372
2.Annotation Information
PubMed ID26312577
JournalJ Clin Endocrinol Metab
Linkwww.ncbi.nlm.nih.gov/pubmed/26312577
StudyBivariate Genome-Wide Association Study Implicates ATP6V1G1 as a Novel Pleiotropic Locus Underlying Osteoporosis and Age at Menarche.
Disease/TraitBone mineral density (spine) and age at menarche
Initial sample826 Han Chinese ancestry females
Replication sample1,728 European ancestry females, 709 African American females, 408 Hispanic/Latin American females
Region1q32.2
Chromosome idchr1
Chromosome position210907839
Reported geneKCNH1
Mapped geneKCNH1
Upstream gene id
Downstream gene id
SNP gene ids3756
Upstream gene distance
Downstream gene distance
SNP risk allelers1697621-?
SNPsrs1697621
Merged
SNP id current1697621
Contextintron_variant
Intergenic0
Allele frequency
P value0.000002
Pvalue mlog5.69897000433601
P value text(East Asian)
Or beta
%95 Ci
PlatformAffymetrix [702413]
CNVN
Mapped traitage at menarche, spine bone mineral density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004703, http://www.ebi.ac.uk/efo/EFO_0007701
Study accessionGCST003101