SNP Detail For rs16971384
1.Mapping Information
Human SNP ID rs16971384
Human chromosome chr16
Human SNP position 72897186
Pig chromosome chr6
Pig SNP position 15167074
2.Annotation Information
PubMed ID21347282
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21347282
StudyGenome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.
Disease/TraitLDL cholesterol
Initial sample7,565 African American individuals
Replication sample3,789 African American and Afro-Caribbean individuals
Region16q22.3
Chromosome idchr16
Chromosome position72897186
Reported geneZFHX3
Mapped geneZFHX3
Upstream gene id
Downstream gene id
SNP gene ids463
Upstream gene distance
Downstream gene distance
SNP risk allelers16971384-A
SNPsrs16971384
Merged0
SNP id current16971384
Contextintron_variant
Intergenic0
Allele frequency0.55
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta0.0715
%95 Ci[0.041-0.102] unit decrease
PlatformAffymetrix [~ 2740000] (imputed)
CNVN
Mapped traitlow density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004611
Study accessionGCST000975