Human SNP ID | rs16971384 |
---|---|
Human chromosome | chr16 |
Human SNP position | 72897186 |
Pig chromosome | chr6 |
Pig SNP position | 15167074 |
PubMed ID | 21347282 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21347282 |
Study | Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project. |
Disease/Trait | LDL cholesterol |
Initial sample | 7,565 African American individuals |
Replication sample | 3,789 African American and Afro-Caribbean individuals |
Region | 16q22.3 |
Chromosome id | chr16 |
Chromosome position | 72897186 |
Reported gene | ZFHX3 |
Mapped gene | ZFHX3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 463 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs16971384-A |
SNPs | rs16971384 |
Merged | 0 |
SNP id current | 16971384 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.55 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 0.0715 |
%95 Ci | [0.041-0.102] unit decrease |
Platform | Affymetrix [~ 2740000] (imputed) |
CNV | N |
Mapped trait | low density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004611 |
Study accession | GCST000975 |